PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110534.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 469aa    MW: 51114.6 Da    PI: 9.2447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001183103323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F r  nL+ H r H
  XP_009110534.1  83 CEVCNKGFQREQNLQLHRRGH 103
                     *******************88 PP

2zf-C2H214.20.00013158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_009110534.1 158 FKCEKCSKRYAVQSDWKAHSKTC 180
                     89*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-780103No hitNo description
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-6146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-7153178No hitNo description
SMARTSM0035588158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSSSYNNSIS SSSTQSFLLV SAATGANNSN REETAMTMIQ QPNSVAPLPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSKQEVIRR  120
KVYLCPEPTC VHHDPSRALG DLTGIKKHYY RKHGEKKFKC EKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESTRNPTVS FTAMAAAAGG GGSRPGFYGS  240
AASALSHNHF GNNSNTSFAP LAAGYNLNRS STEKFEAFLP QSSNPNPGPT NFLMQCPSNQ  300
GFLSQNDQTL MNQHGLISLG DNINNNNNNN SLFNLGYFQD NTKNTDHTSV PSLFTNADNN  360
DPSALLRGLT SSSSSSAVVN DFGDSDNGNF QGLMNSLAAT TDHQGRSGSS LFDLHFGNNL  420
SMGGSDRLTL DFLGVSGGNV SNVNGSGRSG APLDVDMKFP RPNNPFEKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.38350.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110536.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_009110535.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_009110534.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLM4DJL60.0M4DJL6_BRARP; Uncharacterized protein
STRINGBra016694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein